Annotation of co-expression genes

PH01000073G0850's details annotation

1.Annotation

ICBR annotation: ZOS7-07 - C2H2 zinc finger protein

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01000073
Strand: +

RegionStartEnd
gene507281508809
mRNA507281508809
exon507281507690
exon507767508809
CDS507445507690
CDS507767508156

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000075regulation of transcription, DNA-dependent,
sequence-specific DNA binding transcription factor activity,
integral to membrane,
coexpression networkCFinderM000386C2H2 Transcription_Regulator(from PlantTFDB)
GH18 Glycoside_Hydrolases
protein neddylation,
Tify Transcription_Regulator(from iTAK)
coexpression networkCFinderM000699GH18 Glycoside_Hydrolases
Amino_sugar_and_nucleotide_sugar_metabolism
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds,
nitrogen compound metabolic process,
cellular protein modification process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)C2H2
Transcription_Regulator(from PlantTFDB)C2H2

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13912.5zf-C2H2_67599
PF13912.5zf-C2H2_6126150

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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