PH01000078G1430's details annotation
1.Annotation
ICBR annotation: tubulin-specific chaperone E, putative, expressed
Blast result AT1G71440 : 6.40E-93
Blast annotation: tubulin folding cofactor E / Pfifferling (PFI)
2.Location
Scaffold: PH01000078
Strand: -
| Region | Start | End |
| gene | 940358 | 947228 |
| mRNA | 940358 | 947228 |
| exon | 940358 | 940606 |
| exon | 940772 | 940849 |
| exon | 941129 | 941205 |
| exon | 941289 | 941380 |
| exon | 941813 | 941881 |
| exon | 942167 | 942201 |
| exon | 942282 | 942425 |
| exon | 942489 | 942550 |
| exon | 942700 | 942827 |
| exon | 942942 | 943051 |
| exon | 943522 | 943684 |
| exon | 945778 | 947228 |
| CDS | 940508 | 940606 |
| CDS | 940772 | 940849 |
| CDS | 941129 | 941205 |
| CDS | 941289 | 941380 |
| CDS | 941813 | 941881 |
| CDS | 942167 | 942201 |
| CDS | 942282 | 942425 |
| CDS | 942489 | 942550 |
| CDS | 942700 | 942827 |
| CDS | 942942 | 943051 |
| CDS | 943522 | 943684 |
| CDS | 945778 | 945944 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01302.24 | CAP_GLY | 13 | 52 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.