PH01000078G1470's details annotation
1.Annotation
ICBR annotation: eukaryotic translation initiation factor 3 subunit F, putative, expressed
Blast result AT2G39990 : 4.00E-105
Blast annotation: eukaryotic translation initiation factor 2
2.Location
Scaffold: PH01000078
Strand: +
| Region | Start | End |
| gene | 975305 | 979572 |
| mRNA | 975305 | 979572 |
| exon | 975305 | 977449 |
| exon | 977641 | 977720 |
| exon | 978258 | 978487 |
| exon | 978987 | 979081 |
| exon | 979153 | 979266 |
| exon | 979361 | 979572 |
| CDS | 977210 | 977449 |
| CDS | 977641 | 977720 |
| CDS | 978258 | 978487 |
| CDS | 978987 | 979081 |
| CDS | 979153 | 979266 |
| CDS | 979361 | 979450 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01398.20 | JAB | 25 | 130 |
| PF13012.5 | MitMem_reg | 178 | 284 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | translation initiation factor 3 subunit F | ko03013 | K03249 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003743 | translation initiation factor activity |
| GO:0005515 | protein binding |
| GO:0005737 | cytoplasm |
| GO:0005852 | eukaryotic translation initiation factor 3 complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.