PH01000079G0990's details annotation
1.Annotation
ICBR annotation: hypothetical_protein
Blast result AT2G46330 : 5.90E-18
Blast annotation: arabinogalactan protein 16
2.Location
Scaffold: PH01000079
Strand: +
| Region | Start | End |
| gene | 578478 | 581027 |
| mRNA | 578478 | 581027 |
| exon | 578478 | 578835 |
| exon | 580526 | 581027 |
| CDS | 578715 | 578835 |
| CDS | 580526 | 580632 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000798 | nucleosome, nucleosome assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06376.11 | AGP | 33 | 64 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.