PH01000080G0540's details annotation
1.Annotation
ICBR annotation: coronatine-insensitive protein 1, putative, expressed
Blast result AT4G24390 : 0.00E+00
Blast annotation: RNI-like superfamily protein
2.Location
Scaffold: PH01000080
Strand: -
| Region | Start | End |
| gene | 381466 | 384687 |
| mRNA | 381466 | 384687 |
| exon | 381466 | 382680 |
| exon | 382772 | 383282 |
| exon | 383924 | 384687 |
| CDS | 381922 | 382680 |
| CDS | 382772 | 383282 |
| CDS | 383924 | 384510 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000644 | NAC Transcription_Regulator(from PlantTFDB) regulation of transcription, DNA-dependent, Trihelix Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12937.6 | F-box-like | 49 | 80 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.