PH01000080G0680's details annotation
1.Annotation
ICBR annotation: plastocyanin-like domain containing protein, putative, expressed
Blast result AT1G72230 : 1.10E-29
Blast annotation: Cupredoxin superfamily protein
2.Location
Scaffold: PH01000080
Strand: +
| Region | Start | End |
| gene | 497238 | 498327 |
| mRNA | 497238 | 498327 |
| exon | 497238 | 497507 |
| exon | 497634 | 498327 |
| CDS | 497336 | 497507 |
| CDS | 497634 | 498058 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000182 | 3-deoxy-7-phosphoheptulonate synthase activity, aromatic amino acid family biosynthetic process, Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis Phenylalanine,_tyrosine_and_tryptophan_biosynthesis sphingolipid metabolic process, glucosylceramide catabolic process, GH116 Glycoside_Hydrolases Flavonoid_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02298.16 | Cu_bind_like | 36 | 117 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005507 | copper ion binding |
| GO:0009055 | electron carrier activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.