PH01000080G0890's details annotation
1.Annotation
ICBR annotation: growth regulator related protein, putative, expressed
Blast result AT1G22460 : 1.00E-158
Blast annotation: O-fucosyltransferase family protein
2.Location
Scaffold: PH01000080
Strand: +
| Region | Start | End |
| gene | 619578 | 624012 |
| mRNA | 619578 | 624012 |
| exon | 619578 | 620251 |
| exon | 620535 | 620670 |
| exon | 620707 | 620804 |
| exon | 621871 | 621959 |
| exon | 622035 | 622215 |
| exon | 622322 | 622450 |
| exon | 622552 | 622640 |
| exon | 622785 | 622998 |
| exon | 623082 | 623266 |
| exon | 623363 | 623458 |
| exon | 623539 | 624012 |
| CDS | 620069 | 620251 |
| CDS | 620535 | 620670 |
| CDS | 620707 | 620804 |
| CDS | 621871 | 621959 |
| CDS | 622035 | 622215 |
| CDS | 622322 | 622450 |
| CDS | 622552 | 622640 |
| CDS | 622785 | 622998 |
| CDS | 623082 | 623266 |
| CDS | 623363 | 623458 |
| CDS | 623539 | 623680 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000120 | proline biosynthetic process, glutamate 5-kinase activity, cellular amino acid biosynthetic process, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, oxidoreductase activity, metabolic process, CAMK_OST1L (from iTAK) E2F/DP Transcription_Regulator(from PlantTFDB) E2F-DP Transcription_Regulator(from iTAK) glutamate-5-semialdehyde dehydrogenase activity, oxidation-reduction process, transcription factor complex, cytoplasm, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10250.8 | O-FucT | 114 | 424 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.