PH01000080G1300's details annotation
1.Annotation
ICBR annotation: TLD family protein, putative, expressed
Blast result AT4G39870 : 8.60E-81
Blast annotation: TLD-domain containing nucleolar protein
2.Location
Scaffold: PH01000080
Strand: -
| Region | Start | End |
| gene | 876129 | 882874 |
| mRNA | 876129 | 882874 |
| exon | 876129 | 876390 |
| exon | 876475 | 876559 |
| exon | 876746 | 876833 |
| exon | 877191 | 877254 |
| exon | 877343 | 877423 |
| exon | 880104 | 880176 |
| exon | 880257 | 880753 |
| exon | 881655 | 881714 |
| exon | 882639 | 882874 |
| CDS | 876307 | 876390 |
| CDS | 876475 | 876559 |
| CDS | 876746 | 876833 |
| CDS | 877191 | 877254 |
| CDS | 877343 | 877423 |
| CDS | 880104 | 880176 |
| CDS | 880257 | 880753 |
| CDS | 881655 | 881714 |
| CDS | 882639 | 882749 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07534.15 | TLD | 200 | 337 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.