PH01000080G1890's details annotation
1.Annotation
ICBR annotation: glutaredoxin domain containing protein, putative, expressed
Blast result AT4G08550 : 4.00E-133
Blast annotation: electron carriers;protein disulfide oxidoreductases
2.Location
Scaffold: PH01000080
Strand: -
| Region | Start | End |
| gene | 1279059 | 1284504 |
| mRNA | 1279059 | 1284504 |
| exon | 1279059 | 1279548 |
| exon | 1279601 | 1279777 |
| exon | 1281558 | 1281656 |
| exon | 1281805 | 1282096 |
| exon | 1282351 | 1282584 |
| exon | 1282703 | 1282758 |
| exon | 1283053 | 1284504 |
| CDS | 1279519 | 1279548 |
| CDS | 1279601 | 1279777 |
| CDS | 1281558 | 1281656 |
| CDS | 1281805 | 1282096 |
| CDS | 1282351 | 1282584 |
| CDS | 1282703 | 1282758 |
| CDS | 1283053 | 1284255 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00462.23 | Glutaredoxin | 245 | 301 |
| PF00610.20 | DEP | 366 | 433 |
| PF04784.13 | DUF547 | 512 | 672 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009055 | electron carrier activity |
| GO:0015035 | protein disulfide oxidoreductase activity |
| GO:0035556 | intracellular signal transduction |
| GO:0045454 | cell redox homeostasis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.