PH01000082G0020's details annotation
1.Annotation
ICBR annotation: nascent polypeptide-associated complex subunit alpha, putative, expressed
Blast result AT3G12390 : 2.30E-50
Blast annotation: Nascent polypeptide-associated complex (NAC), alpha subunit family protein
2.Location
Scaffold: PH01000082
Strand: +
| Region | Start | End |
| gene | 10288 | 15272 |
| mRNA | 10288 | 15272 |
| exon | 10288 | 10474 |
| exon | 12920 | 13004 |
| exon | 13730 | 13854 |
| exon | 13943 | 15272 |
| CDS | 10406 | 10474 |
| CDS | 12920 | 13004 |
| CDS | 13730 | 13854 |
| CDS | 13943 | 14278 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01849.17 | NAC | 65 | 120 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.