Annotation of co-expression genes

PH01000082G0090's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, putative, expressed

Blast result AT4G03110 : 3.00E-134
Blast annotation: RNA-binding protein-defense related 1

2.Location

Scaffold: PH01000082
Strand: -

RegionStartEnd
gene5021956855
mRNA5021956855
exon5021950703
exon5093451005
exon5108851231
exon5132151660
exon5209752279
exon5297153053
exon5316253287
exon5339953450
exon5424054281
exon5487954961
exon5653356855
CDS5069950703
CDS5093451005
CDS5108851231
CDS5132151660
CDS5209752279
CDS5297153053
CDS5316253287
CDS5339953450
CDS5424054281
CDS5487954961
CDS5653356788

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_146109
PF00076.21RRM_1148216
PF00076.21RRM_1395460

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0003723RNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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