Annotation of co-expression genes

PH01000082G0760's details annotation

1.Annotation

ICBR annotation: 26S proteasome non-ATPase regulatory subunit 14, putative, expressed

Blast result AT5G23540 : 7.00E-152
Blast annotation: Mov34/MPN/PAD-1 family protein

2.Location

Scaffold: PH01000082
Strand: -

RegionStartEnd
gene531601541562
mRNA531601541562
exon531601531863
exon531974532141
exon532225532401
exon533396533462
exon534431534858
exon535662535995
exon536057536216
exon536815537527
exon537856538187
exon539172539253
exon540694540871
exon540987541562
CDS531672531863
CDS531974532141
CDS532225532401
CDS533396533462
CDS534431534858
CDS535662535995
CDS536057536216
CDS536815537527
CDS537856538187
CDS539172539253
CDS540694540871
CDS540987541113

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001382microtubule associated complex,
microtubule-based movement,
microtubule motor activity,
RLK-Pelle_LRK10L-2 (from iTAK)
Proteasome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01398.20JAB25136
PF13012.5MitMem_reg171290

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Proteasome26S proteasome regulatory subunit N11ko03051K03030

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.