Annotation of co-expression genes

PH01000083G0900's details annotation

1.Annotation

ICBR annotation: cytochrome P450, putative, expressed

Blast result AT2G32440 : 1.00E-161
Blast annotation: ent-kaurenoic acid hydroxylase 2

2.Location

Scaffold: PH01000083
Strand: +

RegionStartEnd
gene538700547209
mRNA538700547209
exon538700539087
exon539502539985
exon540081540344
exon540450540539
exon540634540712
exon541017541123
exon541287541408
exon543894544143
exon544349544516
exon544798547209
CDS538855539087
CDS539502539985
CDS540081540344
CDS540450540539
CDS540634540712
CDS541017541123
CDS541287541408
CDS543894544143
CDS544349544516
CDS544798546489

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00067.21p45057465
PF03732.16Retrotrans_gag728817
PF08284.10RVP_29741065

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Diterpenoid biosynthesisent-kaurenoic acid hydroxylase [EC:1.14.13.79]ko00904K04123

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0007275multicellular organismal development
GO:0009055electron carrier activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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