Annotation of co-expression genes

PH01000083G1220's details annotation

1.Annotation

ICBR annotation: MYB family transcription factor, putative, expressed

Blast result AT4G17695 : 7.40E-40
Blast annotation: Homeodomain-like superfamily protein

2.Location

Scaffold: PH01000083
Strand: +

RegionStartEnd
gene744554747605
mRNA744554747605
exon744554745104
exon745220745296
exon746000746042
exon746157746304
exon747220747289
exon747496747605
CDS744591745104
CDS745220745296
CDS746000746042
CDS746157746304
CDS747220747289
CDS747496747594

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000158G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
microtubule,
protein complex,
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
Phagosome
protein polymerization,
microtubule-based process,
DNA binding,
structural constituent of cytoskeleton,
chromatin binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)GARP-G2-like
Transcription_Regulator(from PlantTFDB)G2-like

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00249.30Myb_DNA-binding149200

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003682chromatin binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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