PH01000084G1510's details annotation
1.Annotation
ICBR annotation: vacuolar-sorting receptor precursor, putative, expressed
Blast result AT1G30900 : 2.00E-106
Blast annotation: VACUOLAR SORTING RECEPTOR 6
2.Location
Scaffold: PH01000084
Strand: +
| Region | Start | End |
| gene | 1022510 | 1026226 |
| mRNA | 1022510 | 1026226 |
| exon | 1022510 | 1023675 |
| exon | 1024183 | 1024320 |
| exon | 1024447 | 1024516 |
| exon | 1024691 | 1024774 |
| exon | 1024879 | 1024955 |
| exon | 1025060 | 1025124 |
| exon | 1025257 | 1025398 |
| exon | 1025450 | 1025513 |
| exon | 1025607 | 1025735 |
| exon | 1025802 | 1025929 |
| exon | 1026039 | 1026226 |
| CDS | 1023304 | 1023675 |
| CDS | 1024183 | 1024320 |
| CDS | 1024447 | 1024516 |
| CDS | 1024691 | 1024774 |
| CDS | 1024879 | 1024955 |
| CDS | 1025060 | 1025124 |
| CDS | 1025257 | 1025398 |
| CDS | 1025450 | 1025513 |
| CDS | 1025607 | 1025735 |
| CDS | 1025802 | 1025929 |
| CDS | 1026039 | 1026143 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12662.6 | cEGF | 323 | 341 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.