PH01000086G1500's details annotation
1.Annotation
ICBR annotation: pyridoxamine 5'-phosphate oxidase family protein, putative, expressed
Blast result AT3G03890 : 1.10E-77
Blast annotation: FMN binding
2.Location
Scaffold: PH01000086
Strand: +
| Region | Start | End |
| gene | 995342 | 1002142 |
| mRNA | 995342 | 1002142 |
| exon | 995342 | 995843 |
| exon | 995999 | 996085 |
| exon | 996579 | 996677 |
| exon | 996989 | 997084 |
| exon | 997250 | 997315 |
| exon | 997408 | 997498 |
| exon | 997760 | 997827 |
| exon | 997941 | 998010 |
| exon | 998287 | 998348 |
| exon | 998737 | 998787 |
| exon | 998984 | 999044 |
| exon | 1000515 | 1000615 |
| exon | 1001606 | 1001674 |
| exon | 1001843 | 1002142 |
| CDS | 995793 | 995843 |
| CDS | 995999 | 996085 |
| CDS | 996579 | 996677 |
| CDS | 996989 | 997084 |
| CDS | 997250 | 997315 |
| CDS | 997408 | 997498 |
| CDS | 997760 | 997827 |
| CDS | 997941 | 998010 |
| CDS | 998287 | 998348 |
| CDS | 998737 | 998787 |
| CDS | 998984 | 999044 |
| CDS | 1000515 | 1000615 |
| CDS | 1001606 | 1001674 |
| CDS | 1001843 | 1001929 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13883.5 | Pyrid_oxidase_2 | 30 | 153 |
| PF10615.8 | DUF2470 | 183 | 249 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0010181 | FMN binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.