PH01000086G1560's details annotation
1.Annotation
ICBR annotation: zinc finger family protein, putative, expressed
Blast result AT1G20110 : 8.00E-129
Blast annotation: RING/FYVE/PHD zinc finger superfamily protein
2.Location
Scaffold: PH01000086
Strand: -
| Region | Start | End |
| gene | 1045268 | 1052858 |
| mRNA | 1045268 | 1052858 |
| exon | 1045268 | 1046539 |
| exon | 1046640 | 1046713 |
| exon | 1046795 | 1046825 |
| exon | 1047484 | 1047576 |
| exon | 1048009 | 1048101 |
| exon | 1048731 | 1048841 |
| exon | 1048932 | 1048997 |
| exon | 1049401 | 1049532 |
| exon | 1050399 | 1050530 |
| exon | 1050937 | 1051068 |
| exon | 1051166 | 1051252 |
| exon | 1051474 | 1052858 |
| CDS | 1046462 | 1046539 |
| CDS | 1046640 | 1046713 |
| CDS | 1046795 | 1046825 |
| CDS | 1047484 | 1047576 |
| CDS | 1048009 | 1048101 |
| CDS | 1048731 | 1048841 |
| CDS | 1048932 | 1048997 |
| CDS | 1049401 | 1049532 |
| CDS | 1050399 | 1050530 |
| CDS | 1050937 | 1051068 |
| CDS | 1051166 | 1051252 |
| CDS | 1051474 | 1052175 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01363.20 | FYVE | 350 | 414 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.