PH01000087G1310's details annotation
1.Annotation
ICBR annotation: phytosulfokine receptor precursor, putative, expressed
Blast result AT2G02220 : 0.00E+00
Blast annotation: phytosulfokin receptor 1
2.Location
Scaffold: PH01000087
Strand: +
| Region | Start | End |
| gene | 984304 | 988940 |
| mRNA | 984304 | 988940 |
| exon | 984304 | 985559 |
| exon | 985663 | 988940 |
| CDS | 985019 | 985559 |
| CDS | 985663 | 988154 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000273 | Lysine_biosynthesis L,L-diaminopimelate_aminotransferase_activity lysine biosynthetic process via diaminopimelate, RLK-Pelle_LRR-Xb-1 (from iTAK) MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 31 | 70 |
| PF13855.5 | LRR_8 | 77 | 132 |
| PF00560.32 | LRR_1 | 341 | 362 |
| PF13855.5 | LRR_8 | 417 | 474 |
| PF00560.32 | LRR_1 | 549 | 570 |
| PF00069.24 | Pkinase | 737 | 1001 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.