PH01000089G0800's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G65430 : 0.00E+00
Blast annotation: IBR domain-containing protein
2.Location
Scaffold: PH01000089
Strand: -
| Region | Start | End |
| gene | 571015 | 582846 |
| mRNA | 571015 | 582846 |
| exon | 571015 | 571848 |
| exon | 574053 | 574311 |
| exon | 574593 | 574719 |
| exon | 574841 | 574940 |
| exon | 575039 | 575110 |
| exon | 575276 | 575323 |
| exon | 575849 | 575938 |
| exon | 576018 | 576108 |
| exon | 576837 | 576925 |
| exon | 577007 | 577111 |
| exon | 577645 | 577817 |
| exon | 579056 | 579146 |
| exon | 579496 | 579622 |
| exon | 580015 | 580139 |
| exon | 581721 | 582846 |
| CDS | 571321 | 571848 |
| CDS | 574053 | 574311 |
| CDS | 574593 | 574719 |
| CDS | 574841 | 574940 |
| CDS | 575039 | 575110 |
| CDS | 575276 | 575323 |
| CDS | 575849 | 575938 |
| CDS | 576018 | 576108 |
| CDS | 576837 | 576925 |
| CDS | 577007 | 577111 |
| CDS | 577645 | 577817 |
| CDS | 579056 | 579146 |
| CDS | 579496 | 579622 |
| CDS | 580015 | 580139 |
| CDS | 581721 | 581921 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01485.20 | IBR | 224 | 285 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005622 | intracellular |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.