PH01000091G0950's details annotation
1.Annotation
ICBR annotation: intron-binding protein aquarius, putative, expressed
Blast result AT2G38770 : 8.70E-40
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01000091
Strand: +
| Region | Start | End |
| gene | 632460 | 637284 |
| mRNA | 632460 | 637284 |
| exon | 632460 | 633774 |
| exon | 633807 | 633974 |
| exon | 634073 | 634202 |
| exon | 634329 | 634423 |
| exon | 634486 | 634890 |
| exon | 635666 | 635694 |
| exon | 635787 | 635849 |
| exon | 636430 | 637284 |
| CDS | 633709 | 633774 |
| CDS | 633807 | 633974 |
| CDS | 634073 | 634202 |
| CDS | 634329 | 634423 |
| CDS | 634486 | 634890 |
| CDS | 635666 | 635694 |
| CDS | 635787 | 635849 |
| CDS | 636430 | 636478 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13087.5 | AAA_12 | 21 | 120 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000398 | mRNA splicing, via spliceosome |
| GO:0005681 | spliceosomal complex |
| GO:0097157 | pre-mRNA intronic binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.