Annotation of co-expression genes

PH01000091G1390's details annotation

1.Annotation

ICBR annotation: calmodulin-binding transcription activator, putative, expressed

Blast result AT5G09410 : 0.00E+00
Blast annotation: ethylene induced calmodulin binding protein

2.Location

Scaffold: PH01000091
Strand: +

RegionStartEnd
gene960575971526
mRNA960575971526
exon960575961397
exon961785961904
exon962361962476
exon963227963270
exon963311963353
exon965248965422
exon965729966066
exon966968967306
exon967473968161
exon968359968938
exon970030970353
exon970910971526
CDS961355961397
CDS961785961904
CDS962361962476
CDS963227963270
CDS963311963353
CDS965248965422
CDS965729966066
CDS966968967306
CDS967473968161
CDS968359968938
CDS970030970353
CDS970910971023

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)CAMTA
Transcription_Regulator(from PlantTFDB)CAMTA

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03859.15CG-12295
PF01833.23TIG391474
PF12796.6Ank_2596685
PF00612.26IQ799818
PF00612.26IQ823842

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0005515protein binding
GO:0005634nucleus

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.