PH01000093G0840's details annotation
1.Annotation
ICBR annotation: OTU-like cysteine protease family protein, putative, expressed
Blast result AT1G50670 : 2.20E-73
Blast annotation: OTU-like cysteine protease family protein
2.Location
Scaffold: PH01000093
Strand: -
| Region | Start | End |
| gene | 549371 | 551864 |
| mRNA | 549371 | 551864 |
| exon | 549371 | 549726 |
| exon | 549816 | 549878 |
| exon | 549958 | 550049 |
| exon | 550525 | 550633 |
| exon | 551482 | 551527 |
| exon | 551624 | 551864 |
| CDS | 549562 | 549726 |
| CDS | 549816 | 549878 |
| CDS | 549958 | 550049 |
| CDS | 550525 | 550633 |
| CDS | 551482 | 551527 |
| CDS | 551624 | 551688 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02338.18 | OTU | 12 | 106 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | ubiquitin thioesterase OTU1 [EC:3.1.2.-] | ko04141 | K13719 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.