PH01000093G1330's details annotation
1.Annotation
ICBR annotation: ubiquitin family protein, putative, expressed
Blast result AT4G05320 : 0.00E+00
Blast annotation: polyubiquitin 10
2.Location
Scaffold: PH01000093
Strand: +
| Region | Start | End |
| gene | 826785 | 830590 |
| mRNA | 826785 | 830590 |
| exon | 826785 | 830590 |
| CDS | 827688 | 829061 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00240.22 | ubiquitin | 3 | 74 |
| PF00240.22 | ubiquitin | 79 | 150 |
| PF00240.22 | ubiquitin | 155 | 226 |
| PF00240.22 | ubiquitin | 231 | 302 |
| PF00240.22 | ubiquitin | 307 | 378 |
| PF00240.22 | ubiquitin | 383 | 454 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.