PH01000094G0800's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000094
Strand: -
| Region | Start | End |
| gene | 550460 | 554157 |
| mRNA | 550460 | 554157 |
| exon | 550460 | 551088 |
| exon | 551175 | 551299 |
| exon | 551691 | 551788 |
| exon | 551883 | 552022 |
| exon | 552947 | 553156 |
| exon | 553559 | 554157 |
| CDS | 550936 | 551088 |
| CDS | 551175 | 551299 |
| CDS | 551691 | 551788 |
| CDS | 551883 | 552022 |
| CDS | 552947 | 553156 |
| CDS | 553559 | 553990 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000647 | RLK-Pelle_RLCK-VIIa-2 (from iTAK) |
| coexpression network | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM000861 | Valine,_leucine_and_isoleucine_degradation Valine,_leucine_and_isoleucine_biosynthesis Pantothenate_and_CoA_biosynthesis branched chain family amino acid metabolic process, AGC_RSK-2 (from iTAK) RLK-Pelle_RLCK-VIIa-2 (from iTAK) iron-sulfur cluster assembly, branched-chain-amino-acid transaminase activity, |
| coexpression network | CFinderM001757 | RLK-Pelle_RLCK-VIIa-2 (from iTAK) protein phosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.