PH01000095G0530's details annotation
1.Annotation
ICBR annotation: OTU-like cysteine protease family protein, putative, expressed
Blast result AT3G22260 : 1.30E-82
Blast annotation: Cysteine proteinases superfamily protein
2.Location
Scaffold: PH01000095
Strand: -
| Region | Start | End |
| gene | 390682 | 395781 |
| mRNA | 390682 | 395781 |
| exon | 390682 | 391514 |
| exon | 391662 | 391718 |
| exon | 392192 | 392276 |
| exon | 392707 | 392755 |
| exon | 392853 | 392926 |
| exon | 393092 | 393166 |
| exon | 393840 | 393924 |
| exon | 394903 | 394976 |
| exon | 395429 | 395781 |
| CDS | 391471 | 391514 |
| CDS | 391662 | 391718 |
| CDS | 392192 | 392276 |
| CDS | 392707 | 392755 |
| CDS | 392853 | 392926 |
| CDS | 393092 | 393166 |
| CDS | 393840 | 393924 |
| CDS | 394903 | 394976 |
| CDS | 395429 | 395590 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000897 | Pentose_and_glucuronate_interconversions Ascorbate_and_aldarate_metabolism intramolecular lyase activity, Amino_sugar_and_nucleotide_sugar_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02338.18 | OTU | 102 | 192 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.