PH01000097G0820's details annotation
1.Annotation
ICBR annotation: myosin-Va, putative, expressed
Blast result AT4G33200 : 2.00E-176
Blast annotation: myosin, putative
2.Location
Scaffold: PH01000097
Strand: -
| Region | Start | End |
| gene | 490823 | 496161 |
| mRNA | 490823 | 496161 |
| exon | 490823 | 491029 |
| exon | 491143 | 491244 |
| exon | 491314 | 491460 |
| exon | 492353 | 492489 |
| exon | 492588 | 492737 |
| exon | 493485 | 493641 |
| exon | 494014 | 494072 |
| exon | 494463 | 494619 |
| exon | 494697 | 494842 |
| exon | 495575 | 495718 |
| exon | 495848 | 496161 |
| CDS | 491011 | 491029 |
| CDS | 491143 | 491244 |
| CDS | 491314 | 491460 |
| CDS | 492353 | 492489 |
| CDS | 492588 | 492737 |
| CDS | 493485 | 493641 |
| CDS | 494014 | 494072 |
| CDS | 494463 | 494619 |
| CDS | 494697 | 494842 |
| CDS | 495575 | 495718 |
| CDS | 495848 | 495976 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00063.20 | Myosin_head | 63 | 442 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003774 | motor activity |
| GO:0005524 | ATP binding |
| GO:0016459 | myosin complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.