Annotation of co-expression genes

PH01000098G1010's details annotation

1.Annotation

ICBR annotation: DEAD-box ATP-dependent RNA helicase, putative, expressed

Blast result AT5G05450 : 0.00E+00
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein

2.Location

Scaffold: PH01000098
Strand: -

RegionStartEnd
gene561347567101
mRNA561347567101
exon561347563219
exon563580563827
exon563945564034
exon564187564285
exon564382564495
exon564638564743
exon564845564924
exon565044565304
exon565409565645
exon565750567101
CDS562802563219
CDS563580563827
CDS563945564034
CDS564187564285
CDS564382564495
CDS564638564743
CDS564845564924
CDS565044565304
CDS565409565645
CDS565750566031

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00270.28DEAD45219
PF00271.30Helicase_C269380
PF13959.5DUF4217422480

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0005524ATP binding
GO:0008026ATP-dependent helicase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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