PH01000099G1100's details annotation
1.Annotation
ICBR annotation: OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed
Blast result AT1G76140 : 4.90E-36
Blast annotation: Prolyl oligopeptidase family protein
2.Location
Scaffold: PH01000099
Strand: -
| Region | Start | End |
| gene | 739569 | 741285 |
| mRNA | 739569 | 741285 |
| exon | 739569 | 739939 |
| exon | 740033 | 740080 |
| exon | 740511 | 740730 |
| exon | 740814 | 741285 |
| CDS | 739574 | 739939 |
| CDS | 740033 | 740080 |
| CDS | 740511 | 740730 |
| CDS | 740814 | 740923 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02897.14 | Peptidase_S9_N | 14 | 115 |
| PF00076.21 | RRM_1 | 108 | 145 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0006508 | proteolysis |
| GO:0070008 | serine-type exopeptidase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.