PH01000099G1630's details annotation
1.Annotation
ICBR annotation: transcription factor IIA large subunit, putative, expressed
Blast result AT1G07480 : 7.00E-46
Blast annotation: Transcription factor IIA, alpha/beta subunit
2.Location
Scaffold: PH01000099
Strand: +
| Region | Start | End |
| gene | 1169407 | 1175082 |
| mRNA | 1169407 | 1175082 |
| exon | 1169407 | 1169893 |
| exon | 1170000 | 1170188 |
| exon | 1170281 | 1170448 |
| exon | 1170539 | 1170593 |
| exon | 1170712 | 1170770 |
| exon | 1171843 | 1171968 |
| exon | 1173040 | 1173228 |
| exon | 1173849 | 1173980 |
| exon | 1174057 | 1174111 |
| exon | 1174205 | 1174374 |
| exon | 1174479 | 1174562 |
| exon | 1174922 | 1175082 |
| CDS | 1169774 | 1169893 |
| CDS | 1170000 | 1170188 |
| CDS | 1170281 | 1170448 |
| CDS | 1170539 | 1170593 |
| CDS | 1170712 | 1170770 |
| CDS | 1171843 | 1171968 |
| CDS | 1173040 | 1173228 |
| CDS | 1173849 | 1173980 |
| CDS | 1174057 | 1174111 |
| CDS | 1174205 | 1174374 |
| CDS | 1174479 | 1174562 |
| CDS | 1174922 | 1174930 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03153.12 | TFIIA | 9 | 449 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005672 | transcription factor TFIIA complex |
| GO:0006367 | transcription initiation from RNA polymerase II promoter |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.