PH01000103G0930's details annotation
1.Annotation
ICBR annotation: endonuclease/exonuclease/phosphatase family domain containing protein, expressed
Blast result AT3G58560 : 0.00E+00
Blast annotation: DNAse I-like superfamily protein
2.Location
Scaffold: PH01000103
Strand: +
| Region | Start | End |
| gene | 677988 | 682032 |
| mRNA | 677988 | 682032 |
| exon | 677988 | 679247 |
| exon | 679755 | 679841 |
| exon | 679939 | 680022 |
| exon | 680105 | 680191 |
| exon | 680281 | 680367 |
| exon | 680870 | 680923 |
| exon | 681003 | 681094 |
| exon | 681186 | 681300 |
| exon | 681381 | 681531 |
| exon | 681680 | 682032 |
| CDS | 678537 | 679247 |
| CDS | 679755 | 679841 |
| CDS | 679939 | 680022 |
| CDS | 680105 | 680191 |
| CDS | 680281 | 680367 |
| CDS | 680870 | 680923 |
| CDS | 681003 | 681094 |
| CDS | 681186 | 681300 |
| CDS | 681381 | 681531 |
| CDS | 681680 | 681825 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000672 | WRKY Transcription_Regulator(from PlantTFDB) sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, regulation of transcription, DNA-dependent, RNA_degradation |
| coexpression network | CFinderM001412 | protein neddylation, PLATZ Transcription_Regulator(from iTAK) RLK-Pelle_LRR-VI-2 (from iTAK) cellular protein modification process, Ubiquitin_mediated_proteolysis RNA_degradation small protein activating enzyme activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF15801.4 | zf-C6H2 | 4 | 41 |
| PF03372.22 | Exo_endo_phos | 189 | 522 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | CCR4-NOT transcription complex subunit 6[EC:3.1.-.-] | ko03018 | K12603 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.