PH01000103G1150's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G06610 : 2.50E-42
Blast annotation: Protein of unknown function (DUF620)
2.Location
Scaffold: PH01000103
Strand: +
| Region | Start | End |
| gene | 825924 | 829672 |
| mRNA | 825924 | 829672 |
| exon | 825924 | 828183 |
| exon | 829122 | 829672 |
| CDS | 828178 | 828183 |
| CDS | 829122 | 829640 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000616 | metabolic process, transferase activity, transferring hexosyl groups, Alanine,_aspartate_and_glutamate_metabolism oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, Ascorbate_and_aldarate_metabolism Porphyrin_and_chlorophyll_metabolism Drug_metabolism_-_other_enzymes Retinol_metabolism Metabolism_of_xenobiotics_by_cytochrome_P450 Drug_metabolism_-_cytochrome_P450 Pentose_and_glucuronate_interconversions Steroid_hormone_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04788.11 | DUF620 | 2 | 160 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.