PH01000103G1200's details annotation
1.Annotation
ICBR annotation: OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed
Blast result AT3G58500 : 2.00E-158
Blast annotation: protein phosphatase 2A-4
2.Location
Scaffold: PH01000103
Strand: -
| Region | Start | End |
| gene | 853985 | 863298 |
| mRNA | 853985 | 863298 |
| exon | 853985 | 854771 |
| exon | 855903 | 856010 |
| exon | 856090 | 856179 |
| exon | 856278 | 856469 |
| exon | 857156 | 857222 |
| exon | 857733 | 857773 |
| exon | 857985 | 858056 |
| exon | 858837 | 858908 |
| exon | 859024 | 859107 |
| exon | 860378 | 860434 |
| exon | 861012 | 863298 |
| CDS | 854706 | 854771 |
| CDS | 855903 | 856010 |
| CDS | 856090 | 856179 |
| CDS | 856278 | 856469 |
| CDS | 857156 | 857222 |
| CDS | 857733 | 857773 |
| CDS | 857985 | 858056 |
| CDS | 858837 | 858908 |
| CDS | 859024 | 859107 |
| CDS | 860378 | 860434 |
| CDS | 861012 | 861110 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00149.27 | Metallophos | 57 | 248 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | protein phosphatase 2 (formerly 2A), catalytic subunit [EC:3.1.3.-] | ko03015 | K04382 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.