PH01000104G0700's details annotation
1.Annotation
ICBR annotation: ZOS8-09 - C2H2 zinc finger protein, expressed
Blast result AT1G22310 : 6.90E-23
Blast annotation: methyl-CPG-binding domain 8
2.Location
Scaffold: PH01000104
Strand: -
| Region | Start | End |
| gene | 499541 | 511410 |
| mRNA | 499541 | 511410 |
| exon | 499541 | 501339 |
| exon | 502603 | 502683 |
| exon | 502862 | 504700 |
| exon | 504779 | 504911 |
| exon | 508951 | 511410 |
| CDS | 500764 | 501339 |
| CDS | 502603 | 502683 |
| CDS | 502862 | 504700 |
| CDS | 504779 | 504911 |
| CDS | 508951 | 509183 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C2H2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.