PH01000104G1190's details annotation
1.Annotation
ICBR annotation: homeobox associated leucine zipper, putative, expressed
Blast result AT5G65310 : 3.00E-37
Blast annotation: homeobox protein 5
2.Location
Scaffold: PH01000104
Strand: -
| Region | Start | End |
| gene | 871707 | 873431 |
| mRNA | 871707 | 873431 |
| exon | 871707 | 872094 |
| exon | 872427 | 872507 |
| exon | 872616 | 873431 |
| CDS | 871745 | 872094 |
| CDS | 872427 | 872507 |
| CDS | 872616 | 872673 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-HD-ZIP |
| Transcription_Regulator(from PlantTFDB) | HD-ZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 49 | 102 |
| PF02183.17 | HALZ | 104 | 145 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.