Annotation of co-expression genes

PH01000105G0410's details annotation

1.Annotation

ICBR annotation: AGC_AGC_other_NDRh_TRCd.4 - ACG kinases include homologs to PKA, PKG and PKC, expressed

Blast result AT4G14350 : 0.00E+00
Blast annotation: AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

2.Location

Scaffold: PH01000105
Strand: +

RegionStartEnd
gene259214265196
mRNA259214265196
exon259214259958
exon261360261534
exon262352262593
exon262664262901
exon263481263560
exon263642263726
exon263853263984
exon264062264175
exon264393264440
exon264687264771
exon264879265196
CDS259705259958
CDS261360261534
CDS262352262593
CDS262664262901
CDS263481263560
CDS263642263726
CDS263853263984
CDS264062264175
CDS264393264440
CDS264687264771
CDS264879264979

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase145253
PF00069.24Pkinase304407
PF00433.23Pkinase_C426470

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.