PH01000106G1000's details annotation
1.Annotation
ICBR annotation: leucine-rich repeat resistance protein, putative, expressed
Blast result AT5G61240 : 2.00E-126
Blast annotation: Leucine-rich repeat (LRR) family protein
2.Location
Scaffold: PH01000106
Strand: +
| Region | Start | End |
| gene | 716705 | 722166 |
| mRNA | 716705 | 722166 |
| exon | 716705 | 718428 |
| exon | 719153 | 719300 |
| exon | 719658 | 719729 |
| exon | 720397 | 720468 |
| exon | 720605 | 720760 |
| exon | 720850 | 720993 |
| exon | 721154 | 721234 |
| exon | 721330 | 721401 |
| exon | 721694 | 721765 |
| exon | 721873 | 722166 |
| CDS | 718341 | 718428 |
| CDS | 719153 | 719300 |
| CDS | 719658 | 719729 |
| CDS | 720397 | 720468 |
| CDS | 720605 | 720760 |
| CDS | 720850 | 720993 |
| CDS | 721154 | 721234 |
| CDS | 721330 | 721401 |
| CDS | 721694 | 721765 |
| CDS | 721873 | 721963 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12799.6 | LRR_4 | 174 | 215 |
| PF00560.32 | LRR_1 | 223 | 242 |
| PF13855.5 | LRR_8 | 249 | 309 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.