Annotation of co-expression genes

PH01000110G0290's details annotation

1.Annotation

ICBR annotation: AGC_AGC_other_NDRh_TRCd.4 - ACG kinases include homologs to PKA, PKG and PKC, expressed

Blast result AT2G20470 : 5.00E-125
Blast annotation: AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

2.Location

Scaffold: PH01000110
Strand: -

RegionStartEnd
gene237428250959
mRNA237428250959
exon237428238289
exon238405238489
exon239028239141
exon239219239350
exon239477239561
exon239646239725
exon240183240325
exon241002241239
exon241465241518
exon241837242302
exon242760242971
exon243086243640
exon243723244069
exon244703244838
exon245122245245
exon245581245750
exon246754246991
exon247063247304
exon247383247466
exon247663247837
exon249263250959
CDS238018238289
CDS238405238489
CDS239028239141
CDS239219239350
CDS239477239561
CDS239646239725
CDS240183240325
CDS241002241239
CDS241465241518
CDS241837242302
CDS242760242971
CDS243086243640
CDS243723244069
CDS244703244838
CDS245122245245
CDS245581245750
CDS246754246991
CDS247063247304
CDS247383247466
CDS247663247837
CDS249263249498

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001290Protein_processing_in_endoplasmic_reticulum
AGC_NDR (from iTAK)
coexpression networkCFinderM001894AGC_NDR (from iTAK)
Golgi apparatus,
membrane coat,
clathrin adaptor complex,
nucleic acid binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase125276
PF00069.24Pkinase11411244
PF00433.23Pkinase_C12631291

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.