PH01000110G0590's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G16650 : 1.20E-67
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01000110
Strand: +
| Region | Start | End |
| gene | 434349 | 441606 |
| mRNA | 434349 | 441606 |
| exon | 434349 | 434767 |
| exon | 434832 | 434959 |
| exon | 435039 | 435272 |
| exon | 435419 | 435593 |
| exon | 436331 | 436414 |
| exon | 439279 | 439519 |
| exon | 439627 | 439805 |
| exon | 440868 | 440877 |
| exon | 441137 | 441606 |
| CDS | 434630 | 434767 |
| CDS | 434832 | 434959 |
| CDS | 435039 | 435272 |
| CDS | 435419 | 435593 |
| CDS | 436331 | 436414 |
| CDS | 439279 | 439519 |
| CDS | 439627 | 439805 |
| CDS | 440868 | 440877 |
| CDS | 441137 | 441144 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001492 | mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex, nucleolus, Ubiquitin_mediated_proteolysis ribosome biogenesis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13679.5 | Methyltransf_32 | 46 | 190 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.