PH01000111G0510's details annotation
1.Annotation
ICBR annotation: chitin-inducible gibberellin-responsive protein, putative, expressed
Blast result AT1G21450 : 5.00E-156
Blast annotation: SCARECROW-like 1
2.Location
Scaffold: PH01000111
Strand: -
| Region | Start | End |
| gene | 371572 | 376061 |
| mRNA | 371572 | 376061 |
| exon | 371572 | 372303 |
| exon | 372429 | 372584 |
| exon | 372704 | 373950 |
| exon | 374084 | 374197 |
| exon | 375066 | 376061 |
| CDS | 372105 | 372303 |
| CDS | 372429 | 372584 |
| CDS | 372704 | 373950 |
| CDS | 374084 | 374197 |
| CDS | 375066 | 375104 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GRAS |
| Transcription_Regulator(from PlantTFDB) | GRAS |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03514.13 | GRAS | 216 | 584 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.