PH01000113G0130's details annotation
1.Annotation
ICBR annotation: ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed
Blast result AT5G61410 : 4.00E-115
Blast annotation: D-ribulose-5-phosphate-3-epimerase
2.Location
Scaffold: PH01000113
Strand: +
| Region | Start | End |
| gene | 96232 | 107873 |
| mRNA | 96232 | 107873 |
| exon | 96232 | 96800 |
| exon | 97225 | 97330 |
| exon | 97680 | 97749 |
| exon | 99790 | 99867 |
| exon | 100424 | 100518 |
| exon | 100561 | 100634 |
| exon | 101678 | 101973 |
| exon | 102905 | 103139 |
| exon | 103410 | 103550 |
| exon | 103652 | 103765 |
| exon | 104429 | 104507 |
| exon | 106973 | 107082 |
| exon | 107160 | 107216 |
| exon | 107387 | 107873 |
| CDS | 96423 | 96800 |
| CDS | 97225 | 97330 |
| CDS | 97680 | 97749 |
| CDS | 99790 | 99867 |
| CDS | 100424 | 100518 |
| CDS | 100561 | 100634 |
| CDS | 101678 | 101973 |
| CDS | 102905 | 103139 |
| CDS | 103410 | 103550 |
| CDS | 103652 | 103765 |
| CDS | 104429 | 104507 |
| CDS | 106973 | 107082 |
| CDS | 107160 | 107216 |
| CDS | 107387 | 107515 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00834.18 | Ribul_P_3_epim | 429 | 627 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pentose phosphate pathway | ribulose-phosphate 3-epimerase [EC:5.1.3.1] | ko00030 | K01783 |
| Pentose and glucuronate interconversions | ribulose-phosphate 3-epimerase [EC:5.1.3.1] | ko00040 | K01783 |
| Carbon fixation in photosynthetic organisms | ribulose-phosphate 3-epimerase [EC:5.1.3.1] | ko00710 | K01783 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| GO:0016857 | racemase and epimerase activity, acting on carbohydrates and derivatives |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.