PH01000113G1580's details annotation
1.Annotation
ICBR annotation: transcription initiation factor IIE subunit beta, putative, expressed
Blast result AT4G20330 : 9.60E-90
Blast annotation: Transcription initiation factor TFIIE, beta subunit
2.Location
Scaffold: PH01000113
Strand: +
| Region | Start | End |
| gene | 1026197 | 1029835 |
| mRNA | 1026197 | 1029835 |
| exon | 1026197 | 1027102 |
| exon | 1027664 | 1027795 |
| exon | 1028303 | 1028419 |
| exon | 1029087 | 1029835 |
| CDS | 1026836 | 1027102 |
| CDS | 1027664 | 1027795 |
| CDS | 1028303 | 1028419 |
| CDS | 1029087 | 1029428 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02186.14 | TFIIE_beta | 78 | 137 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Basal transcription factors | transcription initiation factor TFIIE beta subunit | ko03022 | K03137 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005673 | transcription factor TFIIE complex |
| GO:0006367 | transcription initiation from RNA polymerase II promoter |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.