PH01000114G0450's details annotation
1.Annotation
ICBR annotation: UTP--glucose-1-phosphate uridylyltransferase, putative, expressed
Blast result AT5G52560 : 0.00E+00
Blast annotation: UDP-sugar pyrophosphorylase
2.Location
Scaffold: PH01000114
Strand: +
| Region | Start | End |
| gene | 300966 | 308906 |
| mRNA | 300966 | 308906 |
| exon | 300966 | 301305 |
| exon | 301653 | 301757 |
| exon | 302099 | 302215 |
| exon | 302576 | 302716 |
| exon | 303377 | 303476 |
| exon | 303741 | 303868 |
| exon | 303961 | 304032 |
| exon | 304129 | 304193 |
| exon | 304413 | 304473 |
| exon | 304567 | 304684 |
| exon | 305258 | 305388 |
| exon | 305798 | 305874 |
| exon | 306249 | 306354 |
| exon | 307178 | 307237 |
| exon | 307626 | 307661 |
| exon | 307868 | 307948 |
| exon | 308179 | 308418 |
| exon | 308534 | 308659 |
| exon | 308786 | 308906 |
| CDS | 301195 | 301305 |
| CDS | 301653 | 301757 |
| CDS | 302099 | 302215 |
| CDS | 302576 | 302716 |
| CDS | 303377 | 303476 |
| CDS | 303741 | 303868 |
| CDS | 303961 | 304032 |
| CDS | 304129 | 304193 |
| CDS | 304413 | 304473 |
| CDS | 304567 | 304684 |
| CDS | 305258 | 305388 |
| CDS | 305798 | 305874 |
| CDS | 306249 | 306354 |
| CDS | 307178 | 307237 |
| CDS | 307626 | 307661 |
| CDS | 307868 | 307948 |
| CDS | 308179 | 308418 |
| CDS | 308534 | 308659 |
| CDS | 308786 | 308854 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01704.17 | UDPGP | 138 | 288 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pentose and glucuronate interconversions | UDP-sugar pyrophosphorylase [EC:2.7.7.64] | ko00040 | K12447 |
| Ascorbate and aldarate metabolism | UDP-sugar pyrophosphorylase [EC:2.7.7.64] | ko00053 | K12447 |
| Amino sugar and nucleotide sugar metabolism | UDP-sugar pyrophosphorylase [EC:2.7.7.64] | ko00520 | K12447 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016779 | nucleotidyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.