PH01000118G0670's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G11040 : 0.00E+00
Blast annotation: TRS120
2.Location
Scaffold: PH01000118
Strand: -
| Region | Start | End |
| gene | 441094 | 450302 |
| mRNA | 441094 | 450302 |
| exon | 441094 | 441708 |
| exon | 442051 | 443043 |
| exon | 443916 | 444833 |
| exon | 445050 | 445254 |
| exon | 445915 | 446206 |
| exon | 446478 | 446537 |
| exon | 447069 | 447178 |
| exon | 447365 | 447547 |
| exon | 447654 | 447854 |
| exon | 448563 | 450302 |
| CDS | 441488 | 441708 |
| CDS | 442051 | 443043 |
| CDS | 443916 | 444833 |
| CDS | 445050 | 445254 |
| CDS | 445915 | 446206 |
| CDS | 446478 | 446537 |
| CDS | 447069 | 447178 |
| CDS | 447365 | 447547 |
| CDS | 447654 | 447854 |
| CDS | 448563 | 448976 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08626.10 | TRAPPC9-Trs120 | 10 | 195 |
| PF08626.10 | TRAPPC9-Trs120 | 202 | 267 |
| PF08626.10 | TRAPPC9-Trs120 | 333 | 486 |
| PF08626.10 | TRAPPC9-Trs120 | 523 | 713 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.