PH01000119G0260's details annotation
1.Annotation
ICBR annotation: glutamate receptor 2.8 precursor, putative, expressed
Blast result AT2G29110 : 1.70E-83
Blast annotation: glutamate receptor 2.8
2.Location
Scaffold: PH01000119
Strand: +
| Region | Start | End |
| gene | 197271 | 199689 |
| mRNA | 197271 | 199689 |
| exon | 197271 | 197830 |
| exon | 197956 | 198268 |
| exon | 198379 | 198791 |
| exon | 198911 | 199689 |
| CDS | 197477 | 197830 |
| CDS | 197956 | 198268 |
| CDS | 198379 | 198791 |
| CDS | 198911 | 199345 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00497.19 | SBP_bac_3 | 75 | 394 |
| PF00060.25 | Lig_chan | 171 | 426 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004970 | ionotropic glutamate receptor activity |
| GO:0005215 | transporter activity |
| GO:0005234 | extracellular-glutamate-gated ion channel activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
| GO:0030288 | outer membrane-bounded periplasmic space |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.