PH01000121G1330's details annotation
1.Annotation
ICBR annotation: adaptin, putative, expressed
Blast result AT5G11490 : 4.00E-56
Blast annotation: adaptin family protein
2.Location
Scaffold: PH01000121
Strand: +
| Region | Start | End |
| gene | 947564 | 951240 |
| mRNA | 947564 | 951240 |
| exon | 947564 | 948691 |
| exon | 948792 | 949308 |
| exon | 950504 | 951240 |
| CDS | 948636 | 948691 |
| CDS | 948792 | 949308 |
| CDS | 950504 | 950962 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01602.19 | Adaptin_N | 28 | 189 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0006886 | intracellular protein transport |
| GO:0016192 | vesicle-mediated transport |
| GO:0030117 | membrane coat |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.