Annotation of co-expression genes

PH01000122G0370's details annotation

1.Annotation

ICBR annotation: ATP/GTP/Ca++ binding protein, putative, expressed

Blast result AT5G27540 : 0.00E+00
Blast annotation: MIRO-related GTP-ase 1

2.Location

Scaffold: PH01000122
Strand: -

RegionStartEnd
gene200835208251
mRNA200835208251
exon200835200935
exon201245201431
exon202327202477
exon203285203397
exon204444204510
exon204608204819
exon205471205552
exon205787205842
exon206003206071
exon206519206770
exon206889207065
exon207413207559
exon207677207809
exon207951208251
CDS200862200935
CDS201245201431
CDS202327202477
CDS203285203397
CDS204444204510
CDS204608204819
CDS205471205552
CDS205787205842
CDS206003206071
CDS206519206770
CDS206889207065
CDS207413207559
CDS207677207809
CDS207951208159

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00071.21Ras15175
PF08356.11EF_assoc_2228312
PF08355.11EF_assoc_1350418
PF00071.21Ras428586

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0005509calcium ion binding
GO:0005525GTP binding
GO:0005622intracellular
GO:0005741mitochondrial outer membrane
GO:0006184GTP catabolic process
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
GO:0015031protein transport
GO:0016020membrane
GO:0019725cellular homeostasis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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