PH01000122G1270's details annotation
1.Annotation
ICBR annotation: 40S ribosomal protein S26, putative, expressed
Blast result AT3G56340 : 7.10E-28
Blast annotation: Ribosomal protein S26e family protein
2.Location
Scaffold: PH01000122
Strand: +
| Region | Start | End |
| gene | 758116 | 760955 |
| mRNA | 758116 | 760955 |
| exon | 758116 | 758305 |
| exon | 758409 | 758501 |
| exon | 759138 | 759222 |
| exon | 759306 | 759436 |
| exon | 760254 | 760955 |
| CDS | 758303 | 758305 |
| CDS | 758409 | 758501 |
| CDS | 759138 | 759222 |
| CDS | 759306 | 759436 |
| CDS | 760254 | 760337 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01283.18 | Ribosomal_S26e | 1 | 106 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S26e | ko03011 | K02976 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.