PH01000123G1050's details annotation
1.Annotation
ICBR annotation: glycine cleavage system H protein, putative, expressed
Blast result AT2G35120 : 1.50E-65
Blast annotation: Single hybrid motif superfamily protein
2.Location
Scaffold: PH01000123
Strand: -
| Region | Start | End |
| gene | 701479 | 704473 |
| mRNA | 701479 | 704473 |
| exon | 701479 | 701738 |
| exon | 701848 | 702018 |
| exon | 702262 | 702350 |
| exon | 703417 | 704473 |
| CDS | 701610 | 701738 |
| CDS | 701848 | 702018 |
| CDS | 702262 | 702350 |
| CDS | 703417 | 703498 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001032 | glycine cleavage complex, LIM Transcription_Regulator(from iTAK) glycine decarboxylation via glycine cleavage system, glycine catabolic process, actin cytoskeleton organization, Glyoxylate_and_dicarboxylate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01597.18 | GCV_H | 34 | 153 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glyoxylate and dicarboxylate metabolism | glycine cleavage system H protein | ko00630 | K02437 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005960 | glycine cleavage complex |
| GO:0006546 | glycine catabolic process |
| GO:0019464 | glycine decarboxylation via glycine cleavage system |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.