PH01000123G1100's details annotation
1.Annotation
ICBR annotation: porphobilinogen deaminase, chloroplast precursor, putative, expressed
Blast result AT5G08280 : 4.10E-64
Blast annotation: hydroxymethylbilane synthase
2.Location
Scaffold: PH01000123
Strand: +
| Region | Start | End |
| gene | 742515 | 748657 |
| mRNA | 742515 | 748657 |
| exon | 742515 | 743498 |
| exon | 744222 | 744632 |
| exon | 745144 | 745494 |
| exon | 746560 | 746763 |
| exon | 747297 | 747474 |
| exon | 747565 | 748657 |
| CDS | 743364 | 743498 |
| CDS | 744222 | 744632 |
| CDS | 745144 | 745494 |
| CDS | 746560 | 746763 |
| CDS | 747297 | 747474 |
| CDS | 747565 | 747683 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01379.19 | Porphobil_deam | 44 | 183 |
| PF01379.19 | Porphobil_deam | 270 | 368 |
| PF03900.14 | Porphobil_deamC | 381 | 453 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004418 | hydroxymethylbilane synthase activity |
| GO:0018160 | peptidyl-pyrromethane cofactor linkage |
| GO:0033014 | tetrapyrrole biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.