PH01000124G1120's details annotation
1.Annotation
ICBR annotation: FAD binding domain of DNA photolyase domain containing protein, expressed
Blast result AT3G15620 : 0.00E+00
Blast annotation: DNA photolyase family protein
2.Location
Scaffold: PH01000124
Strand: +
| Region | Start | End |
| gene | 827667 | 832561 |
| mRNA | 827667 | 832561 |
| exon | 827667 | 829310 |
| exon | 829408 | 829479 |
| exon | 829566 | 829646 |
| exon | 829747 | 829917 |
| exon | 830004 | 830075 |
| exon | 830212 | 830298 |
| exon | 830353 | 830484 |
| exon | 830567 | 830650 |
| exon | 830958 | 831029 |
| exon | 831329 | 831370 |
| exon | 831540 | 831671 |
| exon | 831769 | 831856 |
| exon | 831936 | 832031 |
| exon | 832118 | 832561 |
| CDS | 829023 | 829310 |
| CDS | 829408 | 829479 |
| CDS | 829566 | 829646 |
| CDS | 829747 | 829917 |
| CDS | 830004 | 830075 |
| CDS | 830212 | 830298 |
| CDS | 830353 | 830484 |
| CDS | 830567 | 830650 |
| CDS | 830958 | 831029 |
| CDS | 831329 | 831370 |
| CDS | 831540 | 831671 |
| CDS | 831769 | 831856 |
| CDS | 831936 | 832031 |
| CDS | 832118 | 832302 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00875.17 | DNA_photolyase | 2 | 161 |
| PF03441.13 | FAD_binding_7 | 328 | 356 |
| PF03441.13 | FAD_binding_7 | 365 | 487 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003913 | DNA photolyase activity |
| GO:0006281 | DNA repair |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.